# Column names
ALLELE		coded_all noncoded_all
CALLRATE 	callrate
CHR		chr
EFFECT 		beta
FREQLABEL 	AF_coded_all 
HWE_PVAL 	HWE_pval
IMPUTED 	imputed
IMP_QUALITY 	oevar_imp
MARKER		SNPID
N 		n_total
POSITION 	position
PVALUE 		pval
STRAND 		strand_genome
STDERR 		SE
USED_FOR_IMP 	used_for_imp

# Plotting filters for the MAF and imputation quality
MAF 0.01    0.05
IMP 0.3     0.5

# Prefix for output files
PREFIX	gwasqc_

# Column N controls the width of boxplots
BOXPLOTWIDTH	N

# Input file and its short name for labels
PROCESS gwa_data_example_1.txt Study1

PVALUE		p
STDERR		StdErr

PROCESS gwa_data_example_2.tbl Study2
PROCESS gwa_data_example_3.csv Study3

PVALUE		pvalue

PROCESS gwa_data_example_4.txt Study4
PROCESS gwa_data_example_5.csv Study5